This is the complete list of members for compact_tree, including all inherited members.

add_child(const CT_NODE_T parent_node, const std::string &new_label=EMPTY_STRING, CT_LENGTH_T new_length=ZERO_LENGTH)	compact_tree	inline
calc_avg_bl(bool include_internal=true, bool include_leaves=true) const	compact_tree	inline
calc_dist(CT_NODE_T u, CT_NODE_T v) const	compact_tree	inline
calc_distance_matrix()	compact_tree
calc_total_bl(bool include_internal=true, bool include_leaves=true) const	compact_tree	inline
children_begin(CT_NODE_T node)	compact_tree	inline
children_end(CT_NODE_T node)	compact_tree	inline
clear_edge_lengths(bool shrink=true)	compact_tree	inline
clear_labels(bool shrink=true)	compact_tree	inline
compact_tree(const char *const input, bool is_fn=true, bool store_labels=true, bool store_lengths=true, size_t reserve=0)	compact_tree
compact_tree(const std::string &input, bool is_fn=true, bool store_labels=true, bool store_lengths=true, size_t reserve=0)	compact_tree	inline
compact_tree(const compact_tree &o)	compact_tree	inline
extract_subtree(CT_NODE_T node)	compact_tree
find_mrca(const std::unordered_set< CT_NODE_T > &nodes) const	compact_tree
get_children(CT_NODE_T node) const	compact_tree	inline
get_edge_length(CT_NODE_T node) const	compact_tree	inline
get_edge_lengths() const	compact_tree	inline
get_label(CT_NODE_T node) const	compact_tree	inline
get_labels() const	compact_tree	inline
get_newick(CT_NODE_T node=ROOT_NODE, bool include_semicolon=true)	compact_tree	inline
get_num_internal()	compact_tree	inline
get_num_leaves()	compact_tree	inline
get_num_nodes() const	compact_tree	inline
get_parent(CT_NODE_T node) const	compact_tree	inline
get_root() const	compact_tree	inline
has_edge_lengths() const	compact_tree	inline
has_labels() const	compact_tree	inline
is_leaf(CT_NODE_T node) const	compact_tree	inline
is_root(CT_NODE_T node) const	compact_tree	inline
leaves_begin()	compact_tree	inline
leaves_end()	compact_tree	inline
levelorder_begin()	compact_tree	inline
levelorder_end()	compact_tree	inline
operator[](CT_NODE_T i) const	compact_tree	inline
postorder_begin()	compact_tree	inline
postorder_end()	compact_tree	inline
preorder_begin()	compact_tree	inline
preorder_end()	compact_tree	inline
print_newick(std::ostream &out, CT_NODE_T node=ROOT_NODE, bool include_semicolon=true)	compact_tree
replace_labels(const std::unordered_map< std::string, std::string > &label_map, bool include_internal=true)	compact_tree	inline
set_edge_length(CT_NODE_T node, CT_LENGTH_T new_length)	compact_tree	inline
set_label(CT_NODE_T node, const std::string &new_label)	compact_tree	inline