Index

A

add_child() (treeswift.Node method)

avg_branch_length() (treeswift.Tree method)

B

branch_lengths() (treeswift.Tree method)

C

child_nodes() (treeswift.Node method) closest_leaf_to_root() (treeswift.Tree method) coalescence_times() (treeswift.Tree method) coalescence_waiting_times() (treeswift.Tree method)

collapse_short_branches() (treeswift.Tree method) colless() (treeswift.Tree method) condense() (treeswift.Tree method) contract() (treeswift.Node method) contract_low_support() (treeswift.Tree method)

D

deroot() (treeswift.Tree method) diameter() (treeswift.Tree method) distance_between() (treeswift.Tree method) distance_matrix() (treeswift.Tree method)

distances_from_parent() (treeswift.Tree method) distances_from_root() (treeswift.Tree method) draw() (treeswift.Tree method) drop_edge_length_at_root() (treeswift.Tree method)

E

edge_length_sum() (treeswift.Tree method) extract_subtree() (treeswift.Tree method)

extract_tree() (treeswift.Tree method) extract_tree_with() (treeswift.Tree method) extract_tree_without() (treeswift.Tree method)

F

find_node() (treeswift.Tree method)

furthest_from_root() (treeswift.Tree method)

G

gamma_statistic() (treeswift.Tree method) get_edge_length() (treeswift.Node method)

get_label() (treeswift.Node method) get_parent() (treeswift.Node method)

H

height() (treeswift.Tree method)

I

indent() (treeswift.Tree method)

is_leaf() (treeswift.Node method) is_root() (treeswift.Node method)

L

label_to_node() (treeswift.Tree method) labels() (treeswift.Tree method)

ladderize() (treeswift.Tree method) lineages_through_time() (treeswift.Tree method) ltt() (treeswift.Tree method)

M

module treeswift

mrca() (treeswift.Tree method) mrca_matrix() (treeswift.Tree method)

N

newick() (treeswift.Node method) (treeswift.Tree method) Node (class in treeswift) num_cherries() (treeswift.Tree method)

num_children() (treeswift.Node method) num_lineages_at() (treeswift.Tree method) num_nodes() (treeswift.Node method) (treeswift.Tree method)

O

order() (treeswift.Tree method)

R

read_tree() (in module treeswift) read_tree_dendropy() (in module treeswift) read_tree_newick() (in module treeswift) read_tree_nexml() (in module treeswift) read_tree_nexus() (in module treeswift)

remove_child() (treeswift.Node method) rename_nodes() (treeswift.Tree method) reroot() (treeswift.Tree method) resolve_polytomies() (treeswift.Node method) (treeswift.Tree method)

S

sackin() (treeswift.Tree method) scale_edges() (treeswift.Tree method) set_edge_length() (treeswift.Node method)

set_label() (treeswift.Node method) set_parent() (treeswift.Node method) suppress_unifurcations() (treeswift.Tree method)

T

traverse_ancestors() (treeswift.Node method) traverse_bfs() (treeswift.Node method) traverse_inorder() (treeswift.Node method) (treeswift.Tree method) traverse_internal() (treeswift.Node method) (treeswift.Tree method) traverse_leaves() (treeswift.Node method) (treeswift.Tree method) traverse_levelorder() (treeswift.Node method) (treeswift.Tree method)

traverse_postorder() (treeswift.Node method) (treeswift.Tree method) traverse_preorder() (treeswift.Node method) (treeswift.Tree method) traverse_rootdistorder() (treeswift.Node method) (treeswift.Tree method) Tree (class in treeswift) treeness() (treeswift.Tree method) treeswift module

W

write_tree_newick() (treeswift.Tree method)

write_tree_nexus() (treeswift.Tree method)